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1

Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato

Garbowicz, Karolina, Liu, Zhongyuan, Alseekh, Saleh, Tieman, Denise, Taylor, Mark, Kuhalskaya, Anastasiya, Ofner, Itai, Zamir, Dani, Klee, Harry J., Fernie, Alisdair R., Brotman, Yariv

Journal:

Molecular Plant

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

2

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Nunes-Nesi, Adriano, Alseekh, Saleh, de Oliveira Silva, Franklin Magnum, Omranian, Nooshin, Lichtenstein, Gabriel, Mirnezhad, Mohammad, González, Roman R. Romero, Garcia, Julia Sabio y, Conte, Mariana

Journal:

Year:

2019

File:

PDF, 1.64 MB

2019

3

PGDH family genes differentially affect Arabidopsis tolerance to salt stress

Rosa-Téllez, Sara, Anoman, Armand D., Alcántara-Enguídanos, Andrea, Garza-Aguirre, Raúl Alejandro, Alseekh, Saleh, Ros, Roc

Journal:

Year:

2020

Language:

english

File:

PDF, 1.45 MB

english, 2020

4

Analysis of Tomato PostâHarvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility

Thole, Vera, Vain, Philippe, Yang, RayâYu, Almeida Barros da Silva, Juliana, Enfissi, Eugenia M. A., Nogueira, Marilise, Price, Elliott J., Alseekh, Saleh, Fernie, Alisdair R., Fraser, Paul D., Hans

Journal:

Current Protocols in Plant Biology

Year:

2020

File:

PDF, 8.97 MB

2020

5

Tomato multiomics at aPEELing resolution

Fernie, Alisdair R., Alseekh, Saleh

Journal:

Year:

2020

File:

PDF, 876 KB

2020

6

On the regulation and function of secondary metabolism during fruit development and ripening

Tohge, T., Alseekh, S., Fernie, A. R.

Journal:

Journal of Experimental Botany

Year:

2014

Language:

english

File:

PDF, 832 KB

english, 2014

7

The genome of the stress-tolerant wild tomato species Solanum pennellii

Bolger, Anthony, Scossa, Federico, Bolger, Marie E, Lanz, Christa, Maumus, Florian, Tohge, Takayuki, Quesneville, Hadi, Alseekh, Saleh, Sørensen, Iben, Lichtenstein, Gabriel, Fich, Eric A, Conte, Mari

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 632 KB

english, 2014

8

The Genetic Architecture of Photosynthesis and Plant Growth Related Traits in Tomato

de Oliveira Silva, Franklin Magnum, Lichtenstein, Gabriel, Alseekh, Saleh, Rosado-Souza, Laise, Conte, Mariana, Suguiyama, Vanessa Fuentes, Lira, Bruno Silvestre, Fanourakis, Dimitrios, Usadel, Björn,

Journal:

Plant, Cell & Environment

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

9

STOREKEEPER RELATED 1/G-element Binding Protein (STKR1)interacts with protein kinase SnRK1

Nietzsche, Madlen, Guerra, Tiziana, Alseekh, Saleh, Wiermer, Marcel, Sonnewald, Sophia, Fernie, Alisdair R., Börnke, Frederik

Journal:

PLANT PHYSIOLOGY

Year:

2017

Language:

english

File:

PDF, 9.70 MB

english, 2017

10

An Integrated Multi-layered Analysis of the Metabolic Networks of Different Tissues Uncovers Key Genetic Components of Primary Metabolism in Maize

Wen, Weiwei, Jin, Min, Li, Kun, Liu, Haijun, Xiao, Yingjie, Zhao, Mingchao, Alseekh, Saleh, Li, Wenqiang, de Abreu e Lima, Francisco, Brotman, Yariv, Willmitzer, Lothar, Fernie, Alisdair R., Yan, Jian

Journal:

The Plant Journal

Year:

2018

Language:

english

File:

PDF, 988 KB

english, 2018

11

Metabolomics 20 years on: What have we learned and what hurdles remain?

Alseekh, Saleh, Fernie, Alisdair R

Journal:

The Plant Journal

Year:

2018

Language:

english

File:

PDF, 512 KB

english, 2018

12

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants

Scossa, Federico, Benina, Maria, Alseekh, Saleh, Zhang, Youjun, Fernie, Alisdair

Journal:

Year:

2018

Language:

english

File:

PDF, 830 KB

english, 2018

13

Tecia solanivora infestation increases tuber starch accumulation inPastusa Suprema potatoes

Kumar, Pavan, Garrido, Etzel, Zhao, Kun, Zheng, Yi, Alseekh, Saleh, Vargas-Ortiz, Erandi, Fernie, Alisdair R., Fei, Zhangjun, Poveda, Katja, Jander, Georg

Journal:

Journal of Integrative Plant Biology

Year:

2018

Language:

english

File:

PDF, 1.32 MB

english, 2018

14

Defining the convergence of ethylene and auxin signaling in tomato

Fernie, Alisdair R., Alseekh, Saleh

Journal:

New Phytologist

Year:

2018

Language:

english

File:

PDF, 310 KB

english, 2018

15

Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato

Shahnejat-Bushehri, Sara, Allu, Annapurna D., Mehterov, Nikolay, Thirumalaikumar, Venkatesh P., Alseekh, Saleh, Fernie, Alisdair R., Mueller-Roeber, Bernd, Balazadeh, Salma

Journal:

Frontiers in Plant Science

Year:

2017

Language:

english

File:

PDF, 3.62 MB

english, 2017

16

Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize

Suzuki, Masaharu, Wu, Shan, Mimura, Manaki, Alseekh, Saleh, Fernie, Alisdair R., Hanson, Andrew D., McCarty, Donald R.

Journal:

The Plant Journal

Year:

2019

Language:

english

File:

PDF, 631 KB

english, 2019

17

Exploiting the natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex

Tohge, Takayuki, Scossa, Federico, Wendenburg, Regina, Frasse, Pierre, Balbo, Ilse, Watanabe, Mutsumi, Alseekh, Saleh, Jadhav, Sagar Sudam, Delfin, Jay C., Lohse, Marc, Giavalisco, Patrick, Usadel, Bj

Journal:

Molecular Plant

Year:

2020

File:

PDF, 2.49 MB

2020

18

Network Analysis Provides Insight into Tomato Lipid Metabolism

Kuhalskaya, Anastasiya, Wijesingha Ahchige, Micha, Perez de Souza, Leonardo, Vallarino, JosÃ©, Brotman, Yariv, Alseekh, Saleh

Journal:

Year:

2020

File:

PDF, 4.08 MB

2020

19

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under waterâdeficit stress

Salem, Mohamed A., Yoshida, Takuya, de Souza, Leonardo Perez, Alseekh, Saleh, Bajdzienko, Krzysztof, Fernie, Alisdair R., Giavalisco, Patrick

Journal:

The Plant Journal

Year:

2020

File:

PDF, 3.84 MB

2020

20

Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seedâspecific flavonols and differential regulation of glycoalkaloid content in tomato

Alseekh, Saleh, Ofner, Itai, Liu, Zhongyuan, Osorio, Sonia, Vallarino, Jose, Last, Robert L., Zamir, Dani, Tohge, Takayuki, Fernie, Alisdair R.

Journal:

The Plant Journal

Year:

2020

File:

PDF, 2.90 MB

2020

21

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

Li, Yan, Chen, Yang, Zhou, Lu, You, Shengjie, Deng, Heng, Chen, Ya, Alseekh, Saleh, Yuan, Yong, Fu, Rao, Zhang, Zixin, Su, Dan, Fernie, Alisdair R., Bouzayen, Mondher, Ma, Tao, Liu, Mingchun, Zhang, Y

Journal:

Molecular Plant

Year:

2020

File:

PDF, 3.77 MB

2020

22

Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs

Salem, Mohamed A., Radwan, Rasha Ali, Mostafa, Eman Sherien, Alseekh, Saleh, Fernie, Alisdair R., Ezzat, Shahira M.

Journal:

Year:

2020

File:

PDF, 1.40 MB

2020

23

The effect of Sarcopoterium spinosum on soil and vegetation characteristics

Ayed G. Mohammad, Saleh H. Alseekh

Journal:

Year:

2013

Language:

english

File:

PDF, 377 KB

english, 2013

24

Molecular polymorphisms in Palestinian Figs (Ficus carica L.) as revealed by Random Amplified Polymorphic DNA (RAPD)

Rezq Basheer-salimia, Murad Awad, Ayed Salama, Saleh Alseekh, Jamil Harb, Yamen Hamdan

Journal:

Journal of Genetic Engineering and Biotechnology

Year:

2012

Language:

english

File:

PDF, 608 KB

english, 2012

25

Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis

Toujani, W., Munoz-Bertomeu, J., Flores-Tornero, M., Rosa-Tellez, S., Anoman, A. D., Alseekh, S., Fernie, A. R., Ros, R.

Journal:

PLANT PHYSIOLOGY

Year:

2013

Language:

english

File:

PDF, 8.72 MB

english, 2013

26

Resolution by recombination: breaking up Solanum pennellii introgressions

Alseekh, Saleh, Ofner, Itai, Pleban, Tzili, Tripodi, Pasquale, Di Dato, Francesco, Cammareri, Maria, Mohammad, Ayed, Grandillo, Silvana, Fernie, Alisdair R., Zamir, Dani

Journal:

Trends in Plant Science

Year:

2013

Language:

english

File:

PDF, 248 KB

english, 2013

27

Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation

Avin-Wittenberg, Tamar, Bajdzienko, Krzysztof, Wittenberg, Gal, Alseekh, Saleh, Tohge, Takayuki, Bock, Ralph, Giavalisco, Patrick, Fernie, Alisdair R.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.50 MB

english, 2015

28

Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato

de Godoy, F., Bermudez, L., Lira, B. S., de Souza, A. P., Elbl, P., Demarco, D., Alseekh, S., Insani, M., Buckeridge, M., Almeida, J., Grigioni, G., Fernie, A. R., Carrari, F., Rossi, M.

Journal:

Journal of Experimental Botany

Year:

2013

Language:

english

File:

PDF, 1.48 MB

english, 2013

29

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

Alseekh, Saleh, Tohge, Takayuki, Wendenberg, Regina, Scossa, Federico, Omranian, Nooshin, Li, Jie, Kleessen, Sabrina, Giavalisco, Patrick, Pleban, Tzili, Mueller-Roeber, Bernd, Zamir, Dani, Nikoloski,

Journal:

Year:

2015

Language:

english

File:

PDF, 4.29 MB

english, 2015

30

Double Knockout Mutants of Arabidopsis Grown under Normal Conditions Reveal that the Plastidial Phosphorylase Isozyme Participates in Transitory Starch Metabolism

Malinova, I., Mahlow, S., Alseekh, S., Orawetz, T., Fernie, A. R., Baumann, O., Steup, M., Fettke, J.

Journal:

PLANT PHYSIOLOGY

Year:

2014

Language:

english

File:

PDF, 1.93 MB

english, 2014

31

Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions

Harb, Jamil, Alseekh, Saleh, Tohge, Takayuki, Fernie, Alisdair R.

Journal:

Year:

2015

Language:

english

File:

PDF, 1020 KB

english, 2015

32

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato

Zhang, Yang, Butelli, Eugenio, Alseekh, Saleh, Tohge, Takayuki, Rallapalli, Ghanasyam, Luo, Jie, Kawar, Prashant G., Hill, Lionel, Santino, Angelo, Fernie, Alisdair R., Martin, Cathie

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

33

Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis

Walid Toujani, Jesús Muñoz-Bertomeu, María Flores-Tornero, Sara Rosa-Téllez, Armand Djoro Anoman, Saleh Alseekh, Alisdair R. Fernie and Roc Ros

Journal:

PLANT PHYSIOLOGY

Year:

2013

Language:

english

File:

PDF, 3.98 MB

english, 2013

34

Lack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis

Kerchev, Pavel I., Waszczak, Cezary, Lewandowska, Aleksandra, Willems, Patrick, Shapiguzov, Alexey, Li, Zhen, Alseekh, Saleh, Mühlenbock, Per, Hoebrichts, Frank, Huang, Jing Jing, Van Der Kelen, Katri

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

35

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing

Garcia, Virginie, Bres, Cécile, Just, Daniel, Fernandez, Lucie, Tai, Fabienne Wong Jun, Mauxion, Jean-Philippe, Le Paslier, Marie-Christine, Bérard, Aurélie, Brunel, Dominique, Aoki, Koh, Alseekh, Sal

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016

36

Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants

Flores-Tornero, María, Anoman, Armand D., Rosa-Téllez, Sara, Toujani, Walid, Weber, Andreas P.M., Eisenhut, Marion, Kurz, Samantha, Alseekh, Saleh, Fernie, Alisdair R., Muñoz-Bertomeu, Jesús, Ros, Roc

Journal:

The Plant Journal

Year:

2017

Language:

english

File:

PDF, 879 KB

english, 2017

37

Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology

Malinova, Irina, Alseekh, Saleh, Feil, Regina, Fernie, Alisdair R., Baumann, Otto, Schöttler, Mark Aurel, Lunn, John E., Fettke, Joerg

Journal:

PLANT PHYSIOLOGY

Year:

2017

Language:

english

File:

PDF, 2.62 MB

english, 2017

38

De novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing

Schmidt, Maximilian HW, Vogel, Alexander, Denton, Alisandra K, Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E, Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich,

Journal:

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

39

Canalization of Tomato Fruit Metabolism

Alseekh, Saleh, Tong, Hao, Scossa, Federico, Brotman, Yariv, Vigroux, Florian, Tohge, Takayuki, Ofner, Itai, Zamir, Daniel, Nikoloski, Zoran, Fernie, Alisdair R.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

40

Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat

Rodriguez Cubillos, Andrés Eduardo, Tong, Hao, Alseekh, Saleh, de Abreu e Lima, Francisco, Yu, Jing, Fernie, Alisdair R., Nikoloski, Zoran, Laitinen, Roosa A. E.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

41

A plastidial pantoate transporter with a potential role in pantothenate synthesis

Huang, Lili, Pyc, Michal, Alseekh, Saleh, McCarty, Donald R, de Crécy-Lagard, Valérie, Gregory, Jesse F., Henry, Christopher S, Fernie, Alisdair R, Mullen, Robert T., Hanson, Andrew D

Journal:

Biochemical Journal

Year:

2018

Language:

english

File:

PDF, 2.21 MB

english, 2018

42

Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation-tolerant plant

Durgud, Meriem, Gupta, Saurabh, Ivanov, Ivan, Omidbakhshfard, Amin, Benina, Maria, Alseekh, Saleh, Staykov, Nikola, Hauenstein, Mareike, Dijkwel, Paul, Hörtensteiner, Stefan, Toneva, Valentina, Brotma

Journal:

PLANT PHYSIOLOGY

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

43

The extra-pathway interactome of the TCA cycle: expected and unexpected metabolic interactions

Zhang, Youjun, Swart, Corné, Alseekh, Saleh, Scossa, Federico, Jiang, Liang, Obata, Toshihiro, Graf, Alexander, Fernie, Alisdair R.

Journal:

PLANT PHYSIOLOGY

Year:

2018

Language:

english

File:

PDF, 1.01 MB

english, 2018

44

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana

Wu, Si, Alseekh, Saleh, Cuadros-Inostroza, Álvaro, Fusari, Corina M., Mutwil, Marek, Kooke, Rik, Keurentjes, Joost B., Fernie, Alisdair R., Willmitzer, Lothar, Brotman, Yariv, Kliebenstein, Daniel J.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.50 MB

english, 2016

45

Reduction of the Cytosolic Phosphoglucomutase in Arabidopsis Reveals Impact on Plant Growth, Seed and Root Development, and Carbohydrate Partitioning

Malinova, Irina, Kunz, Hans-Henning, Alseekh, Saleh, Herbst, Karoline, Fernie, Alisdair R., Gierth, Markus, Fettke, Joerg, Kusano, Miyako

Journal:

Year:

2014

Language:

english

File:

PDF, 8.56 MB

english, 2014

46

ABA, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens

Arif, M. A., Alseekh, S., Harb, J., Fernie, A., Frank, W.

Journal:

Year:

2018

Language:

english

File:

PDF, 720 KB

english, 2018

47

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE 2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas

Kong, Fantao, Burlacot, Adrien, Liang, Yuanxue, Legeret, Bertrand, Alseekh, Saleh, Brotman, Yariv, Fernie, Alisdair R., Krieger-Liszkay, Anja, Beisson, Fred, Peltier, Gilles, Li-Beisson, Yonghua

Journal:

Year:

2018

Language:

english

File:

PDF, 4.69 MB

english, 2018

48

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL

Liu, Zhongyuan, Alseekh, Saleh, Brotman, Yariv, Zheng, Yi, Fei, Zhangjun, Tieman, Denise M., Giovannoni, James J., Fernie, Alisdair R., Klee, Harry J.

Journal:

Frontiers in Plant Science

Year:

2016

Language:

english

File:

PDF, 4.46 MB

english, 2016

49

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population

Brog, Yaacov Micha, Osorio, Sonia, Yichie, Yoav, Alseekh, Saleh, Bensal, Elad, Andriy, Kochevenko, Zamir, Dani, Fernie, Alisdair R.

Journal:

The Plant Journal

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

50

Crop metabolomics: from diagnostics to assisted breeding

Alseekh, Saleh, Bermudez, Luisa, de Haro, Luis Alejandro, Fernie, Alisdair R., Carrari, Fernando

Journal:

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018